Well, as you're using a projector it's probably a better idea to use the MegaZine class directly, instead of using the Main as a document class, because this only adds features that won't work in projectors anyways (such as SWFAddress).
So, what I'd recommend is to just create a new instance in your AS, like so:
import de.mightypirates.megazine.MegaZine;
var mz:MegaZine = new MegaZine("path/to.xml");
addChild(mz);
// do stuff with the class, like (note that this will only work once the xml is loaded and parsed)
mz.gotoPage(5);
The created instance is a normal display object and can be positioned like any other (using the x and y properties, that is).